PPT-Duncan Legge EMBL-EBI Introduction to InterPro

Introduction to Protein Signatures amp InterPro Introduction to InterPro Protein Signatures Protein Signature an amino acid sequence not necessarily consecutive associated with a protein characteristic. EMBL - EBI Campus Hinxton Cambridge CB10 1SD UK T +44 (0) 1223 494 444 F +44 (0) 1223 494 468 http://www.ebi.ac.uk SIFTS – The central resource for integrating sequence and structure J.Jaco XX. AC X03006;. XX. SV X03006.1. XX. DT 28-JAN-1986 (Rel. 08, Created). DT 12-SEP-1993 (Rel. 36, Last updated, Version 2). XX. DE Bovine mRNA for lens beta-s-crystallin. XX. KW beta-crystallin; beta-gamma-crystallin; crystallin.. Ensembl. and . InterPro. Yanbin Yin. Fall 2014. 1. http://. www.ebi.ac.uk. /training/online/course. /. Homework 3. Go to . http://www.ebi.ac.uk/interpro/training.html. and finish the second online training course “Introduction to protein classification at the EBI” and then answer the following questions:. 3/12/2014. First, let’s get some data. Load the Duncan dataset. It’s in the car package. Remember how to get it?. library(car). data(Duncan). Getting started. Okay, now plot income levels:. plot(. 1) Problem Solving Models (RTI or PBS) essentially mean interventions for everyone in need. Essentially any child not responding is considered in need. . 2) No Child Left Behind and IDEIA mandate accountability, or that we have defensible outcome data on all interventions. Daniel Bouchard, . Stonehill. College. . Patrick Clark,. . Stonehill. College. Hsin-hao. Su,. . Stonehill. College. (Funded . by . Stonehill. Undergraduate Research Experience). 6th IWOGL 2010. Daniel Bouchard, . Stonehill. College. . Patrick Clark,. . Stonehill. College. Hsin-hao. Su,. . Stonehill. College. (Funded . by . Stonehill. Undergraduate Research Experience). 6th IWOGL 2010. Luce’s Choice Theory. Assuming invariance of choice probability ratio for any two members of a set of alternatives . :. r. egardless of availability of the other alternatives implies existence of quantities . Attack . One day Percy was woken up by a metal . lion. A: run away . B: fight it. A: run away . You get trampled by a bunch of kids. Try again. Yes. Sorry . YOU LOSE. Attack it. You kill it . You win. ExPASy. , EMBOSS, DTU. ). Yanbin Yin. Fall 2014. 1. Homework assignment 4. Download . http://. cys.bios.niu.edu/yyin/teach/PBB/purdue.cellwall.list.lignin.fa. . to your computer. Select a C3H protein and a F5H protein from . . Stefan Fiedler. EMBL Hamburg . EIROforum. Workshop on Management of Instrumentation Projects, ESO, . Garching. 19.05.2014. Central research object of EMBL. 2. Investigation of. . protein interaction networks (interactomes). Yanbin Yin. Fall 2014. 1. Outline. Intro to EBI. Databases and web tools. UniProt. Gene Ontology. Hands on Practice. MOST MATERIALS ARE FROM: http. ://www.ebi.ac.uk/training/online/course-. list. 2. Three international nucleotide sequence databases. EGI Technical Forum 2012 . The Clarion Congress Hotel, . Freyova. 945/33, Prague. 18 September 2012. Andrew Lyall PhD, ELIXIR Project Manager. Distributed Computing for Life-Sciences &. . Medical Research in the Genome-Age.. Peter Harrison. Genome Analysis Team Leader. EMBL-European Bioinformatics Institute. peter@ebi.ac.uk. @. peterwharrison. The Data Coordination Challenge. The global FAANG initiative consists of hundreds of researchers, across multiple funded projects and from many institutions spread all over the world..