PPT-File input and output Genome 559: Introduction to Statistical and Computational Genomics

Prof William Stafford Noble Opening files The open command returns a file object lt filehandle gt openltfilenamegt ltaccess typegt Python can read write or append to a file. analyze . your data with a mouse click. Igor Makunin. i.makunin@uq.edu.au. QAAFI, UQ, April 8, 2015. Research. Computing. Centre. @ UQ. Genomics Virtual Laboratory. Genome scale experiments are relatively cheap and very popular. An Introduction. By Jack Francis. May 2. nd. 2016. What does this mean?. Conservation. The act of preserving, protecting, or restoring natural systems.. Is at the forefront of biological sciences. How does genomics play a part?. Joachim Bargsten. February 2012. Comparative . genomics. The study of the relationship of genome structure and function. across different biological species or strains. .. Why . should we do this?. How . selection, . regulation, epigenomics, . disease. Manolis Kellis. MIT Computer Science & Artificial Intelligence Laboratory. Broad Institute of MIT and Harvard. Recombination breakpoints. Family Inheritance.  . I. Genetic, Cytological, and Physical Maps. II. Human Genome Project. A. . Goals of the Human Genome Project. B. . Public and Private First Drafts of the Human Genome Sequence. Prof. William Stafford Noble. for. . loop review. block of code. for <element> in <object>:. <statement>. <statement>. . . .. <last statement>. . <element>. is a newly created variable name. You . Prof. William Stafford Noble. Stuff folks liked. Good pace. x3. Powerpoint. was easy to follow. x2. Really appreciate reading the program step by step. x2. Helpful to go over the sample problems at the beginning of class.. selection, . regulation, epigenomics, . disease. Manolis Kellis. MIT Computer Science & Artificial Intelligence Laboratory. Broad Institute of MIT and Harvard. Goal: A systems-level understanding of genomes and gene regulation:. Hardison. Genomics 2_1. 3/1/15. 1. Y Chromosome. 3 billion bp = 3 Gb. Chr1 247 Mb. Chr12 132 Mb. Chr22 50 Mb. A human . genome (. male). The . genome. is . all the DNA. in a cell.. All the DNA on all the chromosomes. “. User facility. providing high-throughput DNA sequencing & analysis in support of DOE missions in alternative . energy. , . carbon cycling . & . bioremediation. .”. Opened in 1999. ~240 UC Employees. G-OnRamp Beta Users Workshop. Wilson Leung. 07/2016. Outline. Obtain genome assemblies from NCBI. Transfer . large genomics datasets to Galaxy. Common bioinformatics file formats . D. atatypes in Galaxy. Iwema. , . PhD, MLS, AHIP. 19. th. March 2014. Molecular Biology Information Service. 1997. Outline. Context. Personal Genomics. Personalized Medicine. Consumer Impact. Context. Broad Timeline of Genetics. . . Shawneequa L. Callier, JD, MA . Associate Professor. Clinical Research and Leadership. School of Medicine and Health Sciences. George Washington University. Special Volunteer. Center for Research on Genomics . Bella Starling. Director of Public . Programmes. , CMFT. Wellcome. Trust Engagement Fellow. About me. Career. Scientist (neuroscience, genetics, stem cells). Science writer. Biomedical ethics. Public engagement, .