PPT-QTL mapping: Definition and case studies

The process of constructing linkage maps and conducting QTL analysis ie to identify genomic regions associated with traits is known as QTL mapping Identification . Nisha Crouser and James Stewart. Building strong bones and teeth. Clotting blood. Sending and receiving nerve signals. Squeezing and relaxing muscles. Releasing hormones and other chemicals. Keeping a normal heartbeat. UW-Madison © Brian S. Yandell. 1. Bayesian QTL Mapping. Brian S. . Yandell. University of Wisconsin-Madison. www.stat.wisc.edu/~yandell/statgen. ↑. . UW-Madison, April . 2010. April 2010. UW-Madison © Brian S. Yandell. Is there an association between marker genotype and quantitative trait phenotype? . - Classify progeny by marker genotype . - . Compare phenotypic mean between classes (t-test or ANOVA) . - . Significance = marker linked to QTL . . in . the . Legume . Genomics Community. January 11. th. , 2015. Tripal. Workshop. Ethy Cannon. Iowa State University. A case study of . Tripal. /Chado. A description of two . Tripal. modules our groups are developing. L. . Cistue. , A. Cuesta-Marcos, S. Chao, B. . Echavarri. , Y. . Chutimanitsakun. , A. Corey, . T. . Filichkina. , N. . Garchia. -Marino, I. . Romagosa. , P. M. Hayes. Rationale/Goals. Aimed to increase the Oregon Wolfe Barley population size to create a more useful linkage map. What are Case Studies?. The IWRM . ToolBox. consists of . knowledge. (how to manage water) and . learning. . (applying the knowledge):. Knowledge. Learning. the . key concepts that have to be addressed in managing water. John Allen. 1. , Jean-Alain Grunchec. 1. , Jules Hernandez. 1. , . Wenhua. Wei. 3. , Ian M.S. White. 1. , Burak Karacaören. 2. , Suzanne Rowe. 2. , . Dirk-Jan de Koning. 2. , Chris S. Haley. 3. and Sara A. Knott. Lead line mapping. Lead line mapping was the earliest form of seafloor mapping; this technique was used in ancient Egypt.. A rope with a weight on the bottom was marked at different “fathoms” and dropped overboard until it hit the sea floor.. This section covers the following: . What market mapping is. Examples of market maps. Benefits of market mapping. Drawbacks of market mapping. Key words. (The) competition. Companies operating in your market or market sector. {in the classical twin design}. Slide acknowledgements (fonts all over the place and inconsistent color coding): . Manuel . Ferreira. , . Pak Sham. , . Shaun Purcell. , . Sarah Medland. , . and . Sophie . BMI/CS 776 . www.biostat.wisc.edu/bmi776/. Spring . 2018. Anthony Gitter. gitter@biostat.wisc.edu. These slides, excluding third-party material, are licensed under . CC BY-NC 4.0. . by Mark Craven, Colin Dewey, and Anthony Gitter. these tools may offer educators as yet unrealised and potentially complementary functions to aid The over-riding aim of all mapping tools is similar. If students can represent or manipulate a complex Baud, A. et al. . Rat Genome Sequencing and Mapping Consortium. Presented by Alex . Gileta. Hailing from the Palmer Lab. Nature Genetics .  . 45. , . . 767–775 (2013). Genetic Variation and Complex Traits. Dr.. Danny Arends. Northumbria University, Sept 2022. danny.arends@northumbria.ac.uk. About me. QTL mapping in 3 slides. LMM-MQM time series mapping. Linear mixed models & Multiple QTL mapping. More statistical power through modelling of time series .